Nothing says cozy quite like a freshly baked batch of Apple Cinnamon Muffins. Imagine plump, tender apples tucked inside a cloud of warm, cinnamon-scented cake, with a crackly sweet topping that gives each bite a delightful crunch. Whether you’re welcoming crisp fall mornings or just craving a treat bursting with homey flavors, these muffins deliver pure comfort and nostalgia in every bite. They’re quick to whip up, versatile for breakfast, snack, or dessert, and honestly, I always find myself sneaking a second one straight from the cooling rack! If you love the magical pairing of apples and cinnamon, this recipe will be your new go-to.

Ingredients You’ll Need
This recipe uses simple household staples, but each ingredient truly pulls its weight, creating moist, fluffy Apple Cinnamon Muffins with incredible flavor and gorgeous color. Here’s what you need and why it matters:
- All-purpose flour: Gives the muffins structure and helps them rise beautifully.
- Baking powder: Ensures your muffins get a lovely, light lift in the oven.
- Baking soda: Works with the yogurt or sour cream for extra tenderness.
- Salt: Balances the sweetness and brings out the apple and cinnamon flavors.
- Ground cinnamon: The star seasoning, adding warmth and that classic spice aroma.
- Ground nutmeg: A subtle touch for extra depth and cozy spice complexity.
- Unsalted butter (softened): Gives rich flavor and that signature muffin crumb.
- Granulated sugar: Sweetens the muffins and helps with lightness.
- Brown sugar: Adds a hint of caramel and moisture. Use for the topping, too!
- Large eggs: Binds everything together and adds tenderness.
- Plain yogurt or sour cream: Keeps the muffins wonderfully moist—sub Greek yogurt for a protein kick.
- Vanilla extract: Enhances all the other flavors and brings a lovely bakery fragrance.
- Peeled and finely chopped apples: Go for a tart-sweet variety like Honeycrisp or Granny Smith for juicy pops of flavor in every bite.
- Optional topping—brown sugar & cinnamon: A quick sprinkle gives you that irresistible sweet, crunchy muffin top.
How to Make Apple Cinnamon Muffins
Step 1: Prep Your Muffin Pan and Oven
Start by preheating your oven to 375°F (190°C), which sets the muffins up for perfect domed tops. Line a 12-cup muffin pan with paper liners or give it a light coat of nonstick spray so nothing sticks—easy cleanup, too!
Step 2: Whisk Together the Dry Ingredients
In a medium bowl, combine the flour, baking powder, baking soda, salt, cinnamon, and nutmeg. Give it all a good whisk to distribute the leaveners and spices, ensuring each muffin has an even flavor and rise.
Step 3: Cream the Butter and Sugars
In a large bowl, beat together your softened butter, granulated sugar, and brown sugar. Mix until it’s light and fluffy—the secret to tender, bakery-style Apple Cinnamon Muffins. This step helps get air into the batter for height and softness.
Step 4: Add Eggs, Yogurt, and Vanilla
Beat in the eggs, one at a time, so they’re fully incorporated. Next, mix in the yogurt (or sour cream) and vanilla extract. These wet ingredients provide moisture and subtle tang for balanced muffins.
Step 5: Mix Wet and Dry Ingredients
Gradually add the flour mixture to the wet ingredients, mixing just until combined. Don’t overmix! You want a thick, slightly lumpy batter for fluffy, tender results.
Step 6: Fold in the Apples
Gently fold in the finely chopped apples. The apples give every muffin juicy pops of sweetness and moisture, making each bite more delicious than the last.
Step 7: Portion and Top
Divide the batter evenly among your prepared muffin cups. In a small bowl, mix brown sugar and cinnamon for the optional topping, then sprinkle over the tops of each muffin for an extra punch of flavor and crunch.
Step 8: Bake and Cool
Bake for 18 to 22 minutes, until the muffins are golden and a toothpick comes out clean. Let them cool in the pan for about 5 minutes—this helps keep their perfect shape—then transfer to a wire rack to cool completely (if you can wait!).
How to Serve Apple Cinnamon Muffins

Garnishes
For a bakery-style finish, dust the tops lightly with powdered sugar or extra cinnamon just before serving. A tiny drizzle of honey or maple glaze also adds a beautiful flavor boost and shine.
Side Dishes
Serve these muffins with a dollop of Greek yogurt and a handful of fresh berries for a complete, satisfying breakfast. They also pair perfectly with a hot cup of coffee, spiced chai, or cold apple cider for an autumnal treat.
Creative Ways to Present
Try stacking your Apple Cinnamon Muffins on a rustic wooden board, nestled among fresh apple slices and cinnamon sticks. You can also wrap them individually in parchment for a charming brunch buffet or picnic basket addition—they’re always a hit at potlucks.
Make Ahead and Storage
Storing Leftovers
Keep leftover muffins in an airtight container at room temperature for up to 2 days. If you want them to last a little longer, pop them in the fridge where they’ll stay fresh for 4 to 5 days—just bring to room temperature before enjoying for the best texture.
Freezing
Apple Cinnamon Muffins freeze like a dream! Once cooled, wrap each muffin in plastic wrap and store them in a freezer bag for up to 3 months. Thaw overnight at room temperature or give them a quick warm-up in the microwave when a muffin craving hits.
Reheating
For bakery-fresh muffins anytime, simply reheat in the microwave for 10-15 seconds or warm them in a 300°F oven for about 5 minutes. This brings back their pillowy softness and makes the apples taste extra juicy.
FAQs
Can I use whole wheat flour for these muffins?
Absolutely! Swap up to half the all-purpose flour for whole wheat to add a nutty bite and extra fiber. The muffins will be slightly denser but still deliciously moist.
What type Breakfast
I love Honeycrisp and Granny Smith for their balance of tart and sweet, but Pink Lady or Fuji are also fantastic choices. Just make sure to peel and finely chop them for even baking.
Can I add nuts or raisins?
Yes! Stir in up to ½ cup chopped toasted walnuts, pecans, or even a handful of golden raisins for extra flavor and texture. They make these muffins even more satisfying.
Do I have to use the topping?
The cinnamon-sugar topping gives these Apple Cinnamon Muffins a craveable, bakery-quality crust, but you can absolutely skip it if you prefer, or try swapping in a streusel or granola for something different.
How do I know when the muffins are done?
Check by inserting a toothpick into the center of a muffin—if it comes out clean or with a few moist crumbs (no raw batter), they’re ready. The tops should be golden and domed.
Final Thoughts
I truly can’t recommend these Apple Cinnamon Muffins enough—they’re the kind of comforting, crowd-pleasing bake you’ll want to make on repeat. If you give them a try, don’t be surprised when they vanish fast! Here’s to cozy mornings, happy snacking, and the unbeatable aroma of apples and cinnamon filling your kitchen.
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Apple Cinnamon Muffins Recipe
- Total Time: 35 minutes
- Yield: 12 muffins 1x
- Diet: Vegetarian
Description
These Apple Cinnamon Muffins are a delightful treat, perfect for breakfast or a snack. Moist and flavorful, they are easy to make and bursting with the warm flavors of apple and cinnamon.
Ingredients
Dry Ingredients:
- 2 cups all-purpose flour
- 1 teaspoon baking powder
- ½ teaspoon baking soda
- ½ teaspoon salt
- 1 ½ teaspoons ground cinnamon
- ¼ teaspoon ground nutmeg
Wet Ingredients:
- ½ cup unsalted butter, softened
- ½ cup granulated sugar
- ¼ cup brown sugar
- 2 large eggs
- ½ cup plain yogurt or sour cream
- 2 teaspoons vanilla extract
- 1 ½ cups peeled and finely chopped apples (such as Honeycrisp or Granny Smith)
Optional Topping:
- 2 tablespoons brown sugar
- ½ teaspoon ground cinnamon
Instructions
- Preheat the oven: Preheat the oven to 375°F (190°C) and prepare a 12-cup muffin pan with liners or by greasing lightly.
- Mix dry ingredients: In a medium bowl, whisk together the flour, baking powder, baking soda, salt, cinnamon, and nutmeg.
- Cream butter and sugars: In a large bowl, cream together the softened butter, granulated sugar, and brown sugar until light and fluffy.
- Add wet ingredients: Beat in the eggs one at a time, then mix in the yogurt and vanilla extract. Gradually add the dry ingredients and fold in the chopped apples.
- Fill muffin cups: Divide the batter among the prepared muffin cups. Mix the topping ingredients in a small bowl and sprinkle over the batter.
- Bake: Bake for 18–22 minutes until a toothpick inserted in the center comes out clean. Let cool for 5 minutes before transferring to a wire rack.
Notes
- These muffins freeze well and reheat nicely.
- For added texture, include chopped walnuts or pecans.
- Greek yogurt can be used as a protein-rich substitute.
- Prep Time: 15 minutes
- Cook Time: 20 minutes
- Category: Breakfast
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 210
- Sugar: 13g
- Sodium: 150mg
- Fat: 9g
- Saturated Fat: 5g
- Unsaturated Fat: 3g
- Trans Fat: 0g
- Carbohydrates: 30g
- Fiber: 1g
- Protein: 3g
- Cholesterol: 45mg